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gamcil / cblaster

Find clustered hits from a BLAST search
MIT License
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No configuration folder detected, please run cblaster config #57

Closed zuoyang97 closed 3 years ago

zuoyang97 commented 3 years ago

Traceback (most recent call last): File "/root/miniconda3/bin/cblaster", line 8, in sys.exit(main()) File "/root/miniconda3/lib/python3.8/site-packages/cblaster/main.py", line 403, in main set_entrez() File "/root/miniconda3/lib/python3.8/site-packages/cblaster/main.py", line 42, in set_entrez cfg = config.get_config_parser() File "/root/miniconda3/lib/python3.8/site-packages/cblaster/config.py", line 20, in get_config_parser raise IOError("No configuration folder detected, please run cblaster config") OSError: No configuration folder detected, please run cblaster config

gamcil commented 3 years ago

Run cblaster config --email your@email.com before trying a search to generate the necessary config files

zuoyang97 commented 3 years ago

(base) root@LIUZUOYANG97:~# cblaster config --email liuzuoyang97@163.com Traceback (most recent call last): File "/root/miniconda3/bin/cblaster", line 8, in sys.exit(main()) File "/root/miniconda3/lib/python3.8/site-packages/cblaster/main.py", line 403, in main set_entrez() File "/root/miniconda3/lib/python3.8/site-packages/cblaster/main.py", line 42, in set_entrez cfg = config.get_config_parser() File "/root/miniconda3/lib/python3.8/site-packages/cblaster/config.py", line 20, in get_config_parser raise IOError("No configuration folder detected, please run cblaster config") OSError: No configuration folder detected, please run cblaster config

<<< conda initialize <<<

export PATH=$PATH:/root/miniconda3/bin/cblaster export PATH=$PATH:/root/miniconda3/lib/python3.8/site-packages/cblaster/config.py

gamcil commented 3 years ago

Thanks, this was a bug. Should be fixed by https://github.com/gamcil/cblaster/commit/2a51cfb8c2fcdf1c46562e374c9a3893a27f0aa7 which I just pushed in v1.3.8. Could you update with pip install --upgrade cblaster and try again?

zuoyang97 commented 3 years ago

I don't think that's your problem.I've run this program on a virtual machine, and it's been very useful for me.But I had some problems running the program on the server,It could be a server problem.