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gamcil / clinker

Gene cluster comparison figure generator
MIT License
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Possible bug in cluster similarity output (-mo option) #104

Open dileep-kishore opened 7 months ago

dileep-kishore commented 7 months ago

The output of the -mo option always creates a file in which the first two columns and rows are 0.0. You can verify this by trying different combinations of the example .gbk files.

A. versicolor CBS 583.65 A. mulundensis DSM 5745
A. versicolor CBS 583.65 0.0 0.0
A. mulundensis DSM 5745 0.0 0.0

It is probably happening because of the way distance is calculated here: https://github.com/gamcil/clinker/blob/a9f426be1316c7f8879f56604df42fcc8aedb5cd/clinker/align.py#L598