gamcil / clinker

Gene cluster comparison figure generator
MIT License
507 stars 66 forks source link

Fix gff empty gene #44

Closed gamcil closed 3 years ago

gamcil commented 3 years ago

Fixes mismatch between GFFUtils/BioPython coordinates causing Gene objects not to be made during GFF parsing. GFFUtils does not zero index feature locations; biopython_integration.to_seqfeature() does, so only have to subtract 1bp when looking at parent genes (which are not converted to SeqFeature objects).