Open ghoresh11 opened 2 years ago
just pinging that I have the same issue. I guess let me know if you found a good solution, lol, I will too...
Hey there. I fixed it for me by doing the described process here: https://github.com/gamcil/clinker/commit/b328fd9635b9ac81b4d6789b49bd8fdfc27985b2 basically, if you comment out the line opening the html plot the html plot, well, doesn't open automatically. I think its dependent on how you installed clinker if it has the updated .py or not.
Hello,
I wrote a script that would automatically take pairs of GBK files and run clinker on them, as I am comparing multiple gene-clusters to each other. My problem is that at the end of every clinker run I get this screen:
Therefore, I cannot run it automatically as clinker requires input from the user at the end of each run. Is there a way to solve this?
I am running clinker as a subprocess from python using the following command:
Many thanks Gal