search

gamcil / clinker

Gene cluster comparison figure generator
MIT License
507 stars 66 forks source link

Clink does not show any features #83

Open MaximePolicarpo opened 2 years ago

MaximePolicarpo commented 2 years ago

Hi !

I am trying to compare a large gene cluster between two non-annotated genomes. To do that, I first generated gff3 files for genes in a particular region of these two genomes. I then transformed those gff3 files into genbank files.

Clinker seems to be able to align those two genbank files, but in the plot, I can't see any genes. I have tried to looked at what was wrong with my genbank files, but I really don't see any problem. I attach the two gbk files I am trying to visualize !

If anybody would have advices or see anything wrong with my files, I am glad to hear ! Thanks,

Best regards,

Maxime Policarpo

neelam19051 commented 1 year ago

Hi, how did you change gff file to gbk? can you please tell me if possible.

Thank you!