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gamcil / clinker

Gene cluster comparison figure generator
MIT License
507 stars 66 forks source link

clustermap loading slow #87

Closed yzjie6 closed 1 year ago

yzjie6 commented 2 years ago

I try to clinker 37 gene cluster but it runs super slow in chrome browser, I also tried different browsers and different computers, it is impossible to edit now, do you have some suggestions about it? Thanks

gamcil commented 2 years ago

Hi @yzjie6, unfortunately there isn't a lot that can be done about this. The visualisation is essentially a big SVG file with a lot of elements which can get slow (especially when you have a lot of clusters). Possibly you could trim your input files before giving them to clinker (if you have extra sequence features up/downstream of the cluster), or split up your analysis into batches and combine the images afterwards (e.g. in InkScape)?