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gammapy / enrico

Enrico helps you with your Fermi data analysis
http://enrico.readthedocs.io/
BSD 3-Clause "New" or "Revised" License
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Enrico_sed creates error for cluster submission. #143

Open jhilikmajumdar opened 5 years ago

jhilikmajumdar commented 5 years ago

Hi,

I am using enrico_sed over a configuration file. If I run the analysis on my home computer everything works fine.

The moment I try to submit the job in cluster using enrico_sed I get the following error in the log file:

`~~ SETUP ENVIRONMENT ~~ HEADASNOQUERY: 1 PYTHONPATH: /lustre/fs22/group/hess/software/ScienceTools-v11r5p3-fssc-20180124-x86_64-unknown-linux-gnu-libc2.17/x86_64-unknown-linux-gnu-libc2.17/lib/python: PATH: /usr/gridengine/scripts:/usr/gridengine/bin/lx-amd64:/batch/42768217.1.std.q:/usr/local/bin:/bin:

/usr/bin:/afs/ifh.de/user/m/majumdar/bin:/afs/ifh.de/user/m/majumdar/scripts

Adding Enrico to PATH and PYTHONPATH

Setting environment variables for data file locations

Run enrico_setupcheck to check if you are set up correctly.

Check your PATH and PYTHONPATH if enrico_setup is not found or gives an error.

Traceback (most recent call last): File "/lustre/fs22/group/hess/software/enrico/enrico/RunGTlike.py", line 5, in from enrico.fitmaker import FitMaker File "/lustre/fs22/group/hess/software/enrico/enrico/fitmaker.py", line 14, in import astropy.io.fits as fits ImportError: No module named astropy.io.fits `

It seems like the executed pythonpath has no module named 'astropy.io.fits'. But I checked the pythonpath separately which has the module named 'astropy.io.fits'.

If you want more details to this problem please let me know.

Thanks in advance.

davidsanchez commented 5 years ago

Hi thanks for using enrico. The only clusters supported yet are the CCIN2P3 at lyon (France), LAPP (france) and MPIK (Germany) you can add yours by changing the script in the submission folder best david

jhilikmajumdar commented 5 years ago

Hi David,

Thanks for replying. I changed LAPP submission script with my institute's batch details. Still the problem remains.

Best, Jhilik

davidsanchez commented 5 years ago

Hi This is certainly because the setup for your farm is not correct. astropy does not come with the Fermitools cheers david

jhilikmajumdar commented 5 years ago

Okay. Thanks. Actually I was not getting the problem at all. I will recheck the setup of my farm. Cheers, Jhilik

mireianievas commented 4 years ago

pyfits is deprecated and replaced by astropy. I'm not sure if the ScienceTools people still support pyfits for old system, if that is the case maybe we can add some if-else statement in the imports.