nirum
commented
5 years ago Ah shoot, thanks for catching this. I can get rid of the jetpack and moviepy dependencies. I added the other dependencies to the requirements.txt file. Will get rid of the other dependencies and comment here once I do.
Trying to install on a fresh conda environment on Ubuntu 16.04, Python 3.7, I ran into the following exceptions after following the installation steps and trying to
import nems. 1) No module namedh5py.pip install h5pysolves it. 2) No module namedsklearn.pip install sklearnsolves it. 3) No module namedproxalgs.pip install proxalgssolves it. 3.1) No module namedtoolz(while installing proxalgs).pip install toolzsolves it. 4) No module namedtqdm.pip install tqdmsolves it. 5) No module namedmatplotlib.pip install matplotlibsolves it. 5.1) ImportError: Failed to import any qt binding.pip install pyqt5solves this. This is more related to how matplotlib is installed, I guess. 6) No module namedjetpack. Trying to install using pip, an unrelated package comes up. Clone and install from nirum/jetpack. 6.1) No module namedmoviepy.pip install moviepysolves it. 6.2) No module namedrequests.pip install requestssolves it. Perhaps moviepy and requests need to be added to jetpack requirements? 7) No module namedpyret. Clone and install from baccuslab/pyret. After all of these steps,import nemsis successful if the working directory is set to where jetpack was cloned into. Otherwise this error is produced. ImportError: cannot import name 'img' from 'jetpack'.Also upon nems import,
need to install descent: github.com/nirum/descentmessage is emitted but no exception is thrown.Most of the import errors could be resolved by adding the missing packages to the respective requirements.txt files for pip to automatically install them. For nems: h5py, sklearn, proxalgs, tqdm, matplotlib, pyqt5 (?) For proxalgs: toolz For jetpack: moviepy, requests
pyret and jetpack need to be installed manually most probably.