how to read the dataset file

gao-lab / Cell_BLAST

A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.

http://cblast.gao-lab.org

MIT License

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Closed caiquanyou closed 3 years ago

caiquanyou commented 3 years ago

@Jeff1995 Hi， I want to test the public dataset provided in https://cblast.gao-lab.org/download but how to read the h5 file，I tried scanpy but failed

Jeff1995 commented 3 years ago

You can just use

dataset = cb.data.ExprDataSet.read_dataset("filename.h5")

See example here.

caiquanyou commented 3 years ago

Thanks