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gao-lab / Cell_BLAST

A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.
http://cblast.gao-lab.org
MIT License
82 stars 13 forks source link

how to build my own references #18

Closed xjs1996 closed 3 years ago

xjs1996 commented 3 years ago

Hi, Thank you for releasing such a good tool for annotation, and I have some questions about building a personal reference. I read your script under /Datasets/collect, and found that some data need annotation files (eg.collect_macparland.py), some other doesn't (eg. collect_chen.R, and in this script ,the input is a rds file, which is confusing because I don't know the exact structure of this data). If you don't mind, would you please just release the "download" directory or some data in this directory? Beacause they are the input of BLAST.ipynb and DIRECTi.ipynb.

Jeff1995 commented 3 years ago

Custom data objects can be constructed via an AnnData like interface:

https://cblast.gao-lab.org/doc-latest/modules/Cell_BLAST.data.html#Cell_BLAST.data.ExprDataSet