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gao-lab / Cell_BLAST

A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.
http://cblast.gao-lab.org
MIT License
82 stars 13 forks source link

The demo dataset to re-run the example #20

Open honghh2018 opened 3 years ago

honghh2018 commented 3 years ago

Hi Dr. Thanks to develop the great tools. I want to use your data to test the pipeline for further analysis myself data. but i can not get the data example -../../Datasets/data/Lawlor/data.h5-you show in the vignette's page: https://cblast.gao-lab.org/doc-latest/_static/BLAST.html. Even though, you demonstration already very well for me, but in few step i can not how to use my data to run the cell_blast in my data myself, without firstly running the whole pipeline that you show in the webpage. I hope the dataset "data/Lawlor/data.h5" can be download for me to re-run again the cell_blast pipeline, if you could. Best, hanhuihong

honghh2018 commented 3 years ago

can anyone hear this?

honghh2018 commented 3 years ago

It would be appreciated, if you do me a favor.

RuiyuRayWang commented 2 years ago

@honghh2018 Check this issue

Sorry for the delayed response. The h5 files can be found at https://cblast.gao-lab.org/download. You can click the dataset names (first column) there to download the h5 files.