Question about TF motif/ChIP-seq data In tuturial

[xuzhougeng]

In the tutorial, you have provided the following data. My question is, this data, how was it obtained?

For human and mouse, the TF motif/ChIP-seq data used in the second step can be downloaded from here:

JASPAR motif hits:

http://download.gao-lab.org/GLUE/cisreg/JASPAR2022-hg19.bed.gz

http://download.gao-lab.org/GLUE/cisreg/JASPAR2022-hg38.bed.gz

http://download.gao-lab.org/GLUE/cisreg/JASPAR2022-mm9.bed.gz

http://download.gao-lab.org/GLUE/cisreg/JASPAR2022-mm10.bed.gz

ENCODE TF ChIP-seq:

http://download.gao-lab.org/GLUE/cisreg/ENCODE-TF-ChIP-hg38.bed.gz

http://download.gao-lab.org/GLUE/cisreg/ENCODE-TF-ChIP-hg19.bed.gz

http://download.gao-lab.org/GLUE/cisreg/ENCODE-TF-ChIP-mm10.bed.gz

http://download.gao-lab.org/GLUE/cisreg/ENCODE-TF-ChIP-mm9.bed.gz

[Jeff1995]

Hi @xuzhougeng! Sorry for the late reply.

These files were produced using the following Snakemake pipelines:

• https://github.com/gao-lab/GLUE/tree/master/data/chip/ENCODE
• https://github.com/gao-lab/GLUE/tree/master/data/motif