No such kernel named ir_4.0.2

[Khalid-Usman]

Hi, I am running GLUE -> experiments -> TripleOmics and I got the following error in file e01_inmf_nbconvert.log.

[NbConvertApp] WARNING | Config option `kernel_spec_manager_class` not recognized by `NbConvertApp`.
[NbConvertApp] Converting notebook e01_inmf.run.ipynb to html
[NbConvertApp] WARNING | Kernelspec name ir_4.0.2 cannot be found!
[NbConvertApp] ERROR | No such kernel named ir_4.0.2

Note: I have installed R 4.3.2 as it was recommended any version higher than 4.0.2

[Jeff1995]

Hi @Khalid-Usman! In that case you may need to modify the kernel spec section in e01_inmf.R to match your installed IRkernel version, likely:

#   kernelspec:
#     display_name: R 4.3.2
#     language: R
#     name: ir_4.3.2