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gao-lab / GLUE

Graph-linked unified embedding for single-cell multi-omics data integration
MIT License
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Some questions related to CLUE #6

Closed HelloWorldLTY closed 2 years ago

HelloWorldLTY commented 2 years ago

Dear Dr. Cao, sorry to disturb you. When I intend to run CLUE based on the open source all datasets provided by the organizers of neurips competition, I find an error: image Even if I run this method before training, I still receive this error for clue.fitting step: image In addition, I think I cannot find these two datasets in the open codes part of this page: https://github.com/openproblems-bio/neurips2021_multimodal_topmethods/tree/main/src/match_modality/methods/clue

including the file prep.pickle and "hyperparams.yaml. I think without these files I cannot utilize the best combination of parameters. image image

Could you please help me? Thanks a lot.

HelloWorldLTY commented 2 years ago

Hi, I solved this problem by using train.py in another folder and had generated embeddings. Thanks a lot.

Jeff1995 commented 2 years ago

Oh that's right, I guess the train folder was for training, and the run folder for evaluation.