Closed vietdhoang closed 1 year ago
Hi Viet, thanks for the report! I don't see any problem based on the above information either. Could you provide a complete traceback and a peak at all columns of rna.var
and atac.var
(e.g., via rna.var.dtypes
)?
Closing this in favor of #69.
Hi,
I'm really interested in trying out GLUE, and I'm currently running the tutorial with the Chen 2019 data to see if everything is running smoothly. When running the tutorial, I'm getting a
ValueError: Invalid BED format!
when trying to generate the guidance graph:guidance = scglue.genomics.rna_anchored_guidance_graph(rna, atac)
.When looking at my RNA and ATAC data, it doesn't seem to be the case:
ATAC-seq
RNA-seq
Would it be possible for someone to point me in the right direction? Am I missing something?
Thanks!