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gao-lab / GLUE

Graph-linked unified embedding for single-cell multi-omics data integration
MIT License
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ValueError when using LSI #92

Open MohammadIzadi opened 1 year ago

MohammadIzadi commented 1 year ago

Hi,

Thanks for developing scglue. When I want to use scglue.data.lsi(atac, n_components=100, n_iter=15), I get this error "ValueError: Found array with 0 feature(s) (shape=(4034, 0)) while a minimum of 1 is required by the normalize function." Can you help me to fix it?

Thanks

Jeff1995 commented 1 year ago

Hi @MohammadIzadi. Thanks for your interest in GLUE!

Could you post a complete traceback so it's easier to pinpoint the problem?