search

gao-lab / SLAT

Spatial-Linked Alignment Tool
https://slat.readthedocs.io/en/latest/
MIT License
71 stars 7 forks source link

A problem about the dataset in Tutorials. #5

Closed CocoGzh closed 9 months ago

CocoGzh commented 9 months ago

Considering that the preprocessing method might lead to inconsistent results, could the author upload the h5ad file to the cloud storage?

xiachenrui commented 9 months ago

We had uploaded the processed .h5ad files of our tutorial to cloud drive. Please check https://slat.readthedocs.io/en/latest/tutorials/basic_usage.html.

CocoGzh commented 9 months ago

We had uploaded the processed .h5ad files of our tutorial to cloud drive. Please check https://slat.readthedocs.io/en/latest/tutorials/basic_usage.html.

Thank you! Is it possible for authors to upload all datasets in https://slat.readthedocs.io/en/latest/data.html to cloud? Alternatively, could authors upload dataset in each typical application? For instance, consider the cross-technology cloud uploads described in this tutorial (https://slat.readthedocs.io/en/latest/tutorials/cross_technology.html).

xiachenrui commented 9 months ago

Ye. it is totally possible ! I plan to achieve this goal in the coming month.

XiHuYan commented 8 months ago

Hi, these processed .h5ad files are available now?

xiachenrui commented 8 months ago

@CocoGzh @XiHuYan Sorry for delay. The processed h5ad files for

  1. xenium (link) and visium (link) in https://slat.readthedocs.io/en/latest/tutorials/cross_technology.html
  2. E11.5 mouse embryo stereo-seq dataset (link) and E12.5 mouse embryo stereo-seq dataset (link) in https://slat.readthedocs.io/en/latest/tutorials/times_series.html

were uploaded.