search

gaoisbest / FastEPRR

My published program for estimating the population recombination rate.
http://www.picb.ac.cn/evolgen/publications/papers/2016Gao_G3.pdf
4 stars 1 forks source link

Error when running #1

Open yuntwang opened 6 years ago

yuntwang commented 6 years ago

Hi, When I use the R software FastEPRR to detect the rho and find a question:

My R code: library(FastEPRR) FastEPRR_ALN(alnFilePath = "D_A/D_A.chr1A.haplo.fas",format = "fasta", winLength = "10",stepLength = "2",outputFilePath = "D_A/D_A.chr1A.haplo.fas.rho")

the error: Error in Cholesky(forceSymmetric(XtX)) : internal_chm_factor: Cholesky factorization failed 此外: There were 50 or more warnings (use warnings() to see the first 50)

why?

gaoisbest commented 6 years ago

Sorry for late reply. Since I have graduated, please send error information to haoziqian@picb.ac.cn and lihaipeng@picb.ac.cn, thanks.