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gaolabtools
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scNanoGPS
Single cell Nanopore sequencing data for Genotype and Phenotype
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Orientation of reads are the opposite of what is expected
#41
Prakrithi-P
opened
2 weeks ago
0
long curator times
#40
ebwinter95
closed
2 months ago
1
CB number of gene filters
#39
wanghlv
closed
2 months ago
17
Bio.pairwise2 has been deprecated
#38
wanghlv
closed
4 months ago
2
Problem with --min_gene_no option of reporter_expression.py
#37
donginLee37
closed
2 months ago
1
bioconda recipe?
#36
nick-youngblut
closed
2 months ago
4
Problem of running reporter_SNV
#35
donginLee37
closed
5 months ago
4
header of CB_merged_list.tsv.gz is weird when using force cell option
#34
donginLee37
closed
5 months ago
2
difference between the number of sum of UMI counts in CB_counting.tsv and the numbers of result counting in scanner.log.txt
#33
myanofgintmd
closed
5 months ago
4
reporter_SNV problem
#32
cariocow
closed
5 months ago
7
matrix_SNV.raw.vcf.gz unzipped in Step 5
#31
oscargamarra
closed
6 months ago
3
Cannot set up scNanoGPS environment
#30
JThomasWatson
closed
6 months ago
2
summary.txt of example input data
#29
myanofgintmd
closed
7 months ago
2
error message at the end of "5.4 Generate final summary table", low java memory.
#28
myanofgintmd
closed
6 months ago
5
error message after "5.2 Single cell isoform profile" is finished
#27
myanofgintmd
closed
7 months ago
2
Quick question about application of master Fastq file
#26
hyeon9
closed
6 months ago
1
Problem when running reporter_SNV.py
#25
cariocow
closed
6 months ago
1
request of an option to output unassigned read fastq file at the scanner and assigner process
#24
myanofgintmd
closed
7 months ago
2
"edditing_distance" option in scanner.py
#23
myanofgintmd
closed
7 months ago
3
Curator Counting Table Not Generated
#22
BenneyMRArgue
closed
7 months ago
2
step4 curator: ValueError: file has no sequences defined (mode='rb')
#21
LilyLuyang
closed
6 months ago
30
Scanner log explanation
#20
chuckzzzz
closed
7 months ago
11
Error during scanner
#19
BenneyMRArgue
closed
9 months ago
5
Minimap2 parameters and secondary alignments
#18
Prakrithi-P
closed
9 months ago
1
Questions on running the example data
#17
madnessfish
closed
11 months ago
2
Low quality reads filtering
#16
chuckzzzz
closed
11 months ago
1
HELP - report_expression
#15
reJELIN
closed
1 year ago
1
Curator - IndexError: list index out of range
#14
reJELIN
closed
1 year ago
6
curator.py error
#13
zhipengliux
closed
1 year ago
1
Running isoform quantification when skipping curation step
#12
chuckzzzz
closed
1 year ago
1
Curator script taking huge time
#11
TR13
closed
1 year ago
2
One UMI shared by two reads simultaneously
#10
kir1to455
closed
1 year ago
1
Running time of scNanoGPS v1.1 assigner.py
#9
shiauck
closed
1 year ago
1
Split the fastq file into 24 chromosomes
#8
kir1to455
closed
1 year ago
8
IsoSeq and MASseq
#7
yoavhadas
closed
1 year ago
1
suggestion - ressources needed
#6
reJELIN
closed
1 year ago
3
Is the toolkit only compatible with 3 prime adapters?
#5
sirselim
closed
1 year ago
1
Error while testing currator.py
#4
alihamraoui
closed
1 year ago
16
Weird behaviour - assigner.py
#3
davidebolo1993
closed
1 year ago
1
Can I use 10x Cell barcode white lite in Assigner step
#2
wuy24
closed
1 year ago
1
Can we setup the length for Scanner.py
#1
wuy24
closed
1 year ago
2