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gaow / SEQPower

Power Analysis and Sample Size Estimation Software for Sequence Based Association Studies
GNU General Public License v2.0
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docker volume permissions #8

Closed aylwyn closed 6 years ago

aylwyn commented 8 years ago

On ubuntu 14.4LTS:

At present when I run e.g. the tutorial command docker run -v $PWD:/home/seqx/data gaow/seqx spower LOGIT Kryukov2009European1800.sfs --sample_size 1000 --OR_rare_detrimental 1.5 --method CFisher -r 1000 -j 4 -l 1 -o exercise I get the following file permission error: ERROR: [Errno 13] Permission denied: '/home/seqx/data/exercise.log'

This does not seem to be a general docker problem, e.g. I can run docker run -v $PWD:/foo ubuntu touch /foo/bar without any problems. (Other than that foo is owned by root but that's a more general docker issue.)

aylwyn commented 8 years ago

(should add, I also compiled spower from source and it seems to be working ok. But would be nice to have the docker container working.)

gaow commented 6 years ago

SEQPower is best executed with Docker. Docker image for SEQPower and instruction to run SEQPower from docker has been updated here.