gaoyubang nanom6A issues

gaoyubang / nanom6A

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Nanom6a Compatibility question

#24 nickst85 opened 3 months ago
0
How to know which transcript of a gene has been modified?

#23 SEVEN-XYCHEN opened 1 year ago
1
UnboundLocalError: local variable 'strand' referenced before assignment

#22 zengwanqin opened 1 year ago
1
How can I get the m6A-modified sites?

#21 William-chen777 opened 1 year ago
0
me-RIP/m6a-REF-SEQ data?

#20 biodlab opened 2 years ago
0
about validation set used in your paper

#19 xieyy46 opened 2 years ago
2
gene2transcripts.txt is an optional or must-have argument

#18 ynren1020 opened 2 years ago
1
tombo issue

#17 kir1to455 opened 2 years ago
0
Empty result file from extract raw and feature fast

#16 Wardale24 opened 2 years ago
7
query regarding output file

#15 aman21392 closed 2 years ago
6
emp

#14 yuxinPenny opened 2 years ago
8
minimam coverage when outputting results

#13 PengNi closed 2 years ago
4
Display NA in gene name in genome_abandance.0.x.bed

#12 YCCHEN23 closed 2 years ago
7
Regarding about model you provide

#11 aman21392 opened 2 years ago
1
about parameter

#10 xj-Liang-Olga opened 2 years ago
3
Showing error in predict_sites.py command

#9 aman21392 closed 2 years ago
6
ERROR: Requested column 1, but database file - only has fields 1 - 0. （predict_sites.py ）

#8 Derryxu opened 3 years ago
5
the error about predict_sites

#7 woshiyangsi opened 3 years ago
12
Received IndexError while predictin m6a sites

#6 YCCHEN23 closed 2 years ago
6
0-based or 1-based in predict_sites.py read2genome2 function?

#5 XINYAN2 closed 3 years ago
1
The KeyError from predict_sites.py", line 277, in site2corrd

#4 q1134269149 closed 3 years ago
7
Could you provide the your trained model file?

#3 q1134269149 closed 3 years ago
10
Can you provide the conda.yml

#2 q1134269149 opened 3 years ago
5
Hi i meet a tombo resquiggle error：Reads do not to contain basecalls. Check --basecall-group option if basecalls are stored in non-standard location or use tombo annotate_raw_with_fastqs to add basecalls from FASTQ files to raw FAST5 files. which do you use version of tombo?

#1 LegendZDY opened 3 years ago
10