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gap-packages / NormalizInterface

A package for using normaliz from within GAP
https://gap-packages.github.io/NormalizInterface/
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Error while building #42

Closed mohamed-barakat closed 7 years ago

mohamed-barakat commented 8 years ago

While building NormalizInterface with

./build-normaliz.sh

for gap 4.8.4 on my Mac OS X 10.10 with Fink 0.39.5 I got the following error

Found GAP in directory /Users/mo/software/gap/gap_current GAParch = x86_64-apple-darwin14.5.0--default64 GAP was built with external GMP -- The C compiler identification is AppleClang 7.0.2.7000181 -- The CXX compiler identification is AppleClang 7.0.2.7000181 -- Check for working C compiler: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/cc -- Check for working C compiler: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++ -- Check for working CXX compiler: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test COMPILER_SUPPORTS_CXX11 -- Performing Test COMPILER_SUPPORTS_CXX11 - Success -- Performing Test COMPILER_SUPPORTS_CXX0X -- Performing Test COMPILER_SUPPORTS_CXX0X - Success -- Try OpenMP C flag = [ ] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Failed -- Try OpenMP C flag = [-fopenmp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Failed -- Try OpenMP C flag = [/openmp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Failed -- Try OpenMP C flag = [-Qopenmp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Failed -- Try OpenMP C flag = [-openmp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Failed -- Try OpenMP C flag = [-xopenmp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Failed -- Try OpenMP C flag = [+Oopenmp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Failed -- Try OpenMP C flag = [-qsmp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Failed -- Try OpenMP C flag = [-mp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Failed -- Try OpenMP CXX flag = [ ] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Failed -- Try OpenMP CXX flag = [-fopenmp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Failed -- Try OpenMP CXX flag = [/openmp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Failed -- Try OpenMP CXX flag = [-Qopenmp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Failed -- Try OpenMP CXX flag = [-openmp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Failed -- Try OpenMP CXX flag = [-xopenmp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Failed -- Try OpenMP CXX flag = [+Oopenmp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Failed -- Try OpenMP CXX flag = [-qsmp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Failed -- Try OpenMP CXX flag = [-mp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Failed -- Could NOT find OpenMP (missing: OpenMP_C_FLAGS OpenMP_CXX_FLAGS) -- Not using OpenMP, compiler does not support it -- Found GMP: /sw/lib/gmp5/libgmp.dylib -- GMP found with include dir: /sw/include -- GMP found with lib dir: /sw/lib/gmp5 -- GMP found with lib : /sw/lib/gmp5/libgmp.dylib -- GMP found with static lib : /sw/lib/gmp5/libgmp.a -- Found GMPXX: /sw/lib/gmp5/libgmpxx.dylib -- GMPXX found with include dir: /sw/include -- GMPXX found with lib : /sw/lib/gmp5/libgmpxx.dylib -- GMPXX found with static lib : /sw/lib/gmp5/libgmpxx.a -- Boost version: 1.53.0 -- Configuring done -- Generating done -- Build files have been written to: /Users/mo/software/pkg/NormalizInterface/Normaliz.git/BUILD Scanning dependencies of target normaliz-shared [ 11%] Building CXX object libnormaliz/CMakeFiles/normaliz-shared.dir/cone_property.cpp.o [ 22%] Building CXX object libnormaliz/CMakeFiles/normaliz-shared.dir/HilbertSeries.cpp.o [ 33%] Building CXX object libnormaliz/CMakeFiles/normaliz-shared.dir/libnormaliz-templated.cpp.o [ 44%] Building CXX object libnormaliz/CMakeFiles/normaliz-shared.dir/cone_helper.cpp.o [ 55%] Building CXX object libnormaliz/CMakeFiles/normaliz-shared.dir/offload_handler.cpp.o [ 66%] Building CXX object libnormaliz/CMakeFiles/normaliz-shared.dir/bottom.cpp.o [ 77%] Linking CXX shared library libnormaliz.dylib [ 77%] Built target normaliz-shared Scanning dependencies of target normaliz [ 88%] Building CXX object CMakeFiles/normaliz.dir/Normaliz.cpp.o [100%] Linking CXX executable normaliz Undefined symbols for architecture x86_64: "std::1::basic_string<char, std::__1::char_traits, std::1::allocator > libnormaliz::toString(long)", referenced from: std::1::map<libnormaliz::Type::InputType, std::1::vector<std::1::vector<gmp_expr<mpz_struct [1], __mpz_struct [1]>, std::1::allocator<gmp_expr<__mpz_struct [1], mpz_struct [1]> > >, std::1::allocator<std::1::vector<gmp_expr<__mpz_struct [1], mpz_struct [1]>, std::1::allocator<gmp_expr<mpz_struct [1], __mpz_struct [1]> > > > >, std::1::lesslibnormaliz::Type::InputType, std::1::allocator<std::1::pair<libnormaliz::Type::InputType const, std::1::vector<std::1::vector<gmp_expr<__mpz_struct [1], mpz_struct [1]>, std::1::allocator<gmp_expr<mpz_struct [1], __mpz_struct [1]> > >, std::1::allocator<std::1::vector<gmp_expr<mpz_struct [1], __mpz_struct [1]>, std::1::allocator<gmp_expr<__mpz_struct [1], mpz_struct [1]> > > > > > > > readNormalizInput<gmp_expr<__mpz_struct [1], mpz_struct [1]> >(std::1::basic_istream<char, std::__1::char_traits >&, OptionsHandler&) in Normaliz.cpp.o std::1::map<libnormaliz::Type::InputType, std::1::vector<std::1::vector<long long, std::1::allocator >, std::1::allocator<std::1::vector<long long, std::1::allocator > > >, std::1::lesslibnormaliz::Type::InputType, std::1::allocator<std::1::pair<libnormaliz::Type::InputType const, std::1::vector<std::1::vector<long long, std::1::allocator >, std::1::allocator<std::1::vector<long long, std::1::allocator > > > > > > readNormalizInput(std::1::basic_istream<char, std::__1::char_traits >&, OptionsHandler&) in Normaliz.cpp.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) CMakeFiles/normaliz.dir/build.make:97: recipe for target 'normaliz' failed make[2]: * [normaliz] Error 1 CMakeFiles/Makefile2:131: recipe for target 'CMakeFiles/normaliz.dir/all' failed make[1]: * [CMakeFiles/normaliz.dir/all] Error 2 Makefile:127: recipe for target 'all' failed make: *\ [all] Error 2

Note: I built gap to use the system gmp and not the one shipped with gap.

mohamed-barakat commented 7 years ago

Compile error reproducible with

sebasguts commented 7 years ago

This was solved by switching to the new Normaliz build system