even with 0 counts, are written to the gene-level output file; 3)
'proper' multimapper handling now first checks all mapping locations to
see if they map to any transcript, IGNORING THE STRAND. Then, before
saving the unique transcript-mapping read, the read is checked to make
sure it maps to the chosen transcript on the correct strand.
even with 0 counts, are written to the gene-level output file; 3) 'proper' multimapper handling now first checks all mapping locations to see if they map to any transcript, IGNORING THE STRAND. Then, before saving the unique transcript-mapping read, the read is checked to make sure it maps to the chosen transcript on the correct strand.