1) Now uses getAlignmentEnd() to get the alignment start position of
alignments on the - strand.
2) Removed outdated updateUmiCounts() method.
3) Fixed InDropPreprocess to expect :: insted of
2-part barcode. This should be the standard for of labeling for all
single-cell alignments in the future.
1) Now uses getAlignmentEnd() to get the alignment start position of alignments on the - strand. 2) Removed outdated updateUmiCounts() method. 3) Fixed InDropPreprocess to expect:: insted of
2-part barcode. This should be the standard for of labeling for all
single-cell alignments in the future.