Added -filtAT command-line switch and implementation of long-A/T filter

garber-lab / ESAT

Stripped-down version of original ESAT code

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Added -filtAT command-line switch and implementation of long-A/T filter #17

Closed ADerr closed 7 years ago

ADerr commented 8 years ago

in the SAMSequenceCountingDict mdoule. Aalls to the A/T filter were added in the main module (countReadStartsFromAlignments and fillExperimentWindowCounter) and InDropPreprocess (fillBarcodeCounts and InDropPreprocess).