config.json: set up all the variables, including the script you want to run:
registration.sh: Non-linear registration to the MNI template (you can choose any other reference you want by editing the proper variables in config.json)
skullStripping.sh: if subjects have skull , perform skull stripping before register
transform.sh: transform native ROIs to the warped brain to obtain ROIs in the reference space
if ROIs are in mat before transform, convert them to Nifti by running rois_mat2nifti.m
probabilisticMap.m : once registration and transformation are completed, run this matlab script to obtain the probabilistic maps
SLF123 script package:
config.json: set up all the variables, including the script you want to run:
if ROIs are in mat before transform, convert them to Nifti by running rois_mat2nifti.m
probabilisticMap.m : once registration and transformation are completed, run this matlab script to obtain the probabilistic maps