error in metagenemark - Githubissues

gatech-genemark / GeneMark-EP-plus

GeneMark-EP and -EP+: automatic eukaryotic gene prediction supported by spliced aligned proteins

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error in metagenemark #2

Closed top334 closed 3 years ago

top334 commented 3 years ago

I have install the metagenemark on linux64, and I have done “cp gm_key ~/.gm_key”. It still have a error when run the shell. And I search online didn’t find the similar situation. The shell codes is: gmhmmp -m MetaGeneMark_v1.mod -a -k -f G -o gene.gff ./04_metaSPAdes/contigs.fasta 2>r4.metagenemark.err

the error message is: gmhmmp: error, on open file MetaGeneMark_v1.mod

the category of the mgm is as follow

tomasbruna commented 3 years ago

Hello, please contact Alex Lomsadze (http://exon.gatech.edu/GeneMark/contact.html) with this issue, he's maintaining MetaGeneMark and should be able to help.

top334 commented 3 years ago

OK thank you