Closed Thexiyang closed 1 year ago
Hi,
Could be a problem with the pandas or numpy version. Which versions are you using?
If you could share your input file and the command you used, I can try to reproduce the error and see what's causing it.
Best, Aaron
Closing due to inactivity. Please, re-open if this issue persists.
Hi, Aaron
Thanks for providing us with this excellent tool! During the runtime, I met the same problem as above. And the versions of
pandas numpy, which I used were v1.2.4 and v1.18.1, respectively. Here is my input file and input command. Please help me
solve this problem. Thank you!
mgcod.py -i test.fa -r --isoforms -v -m ./plots -p test_mgm_result -o test_results
Best wishes, Shujie.
Hi Shujie,
Thanks for using Mgcod and glad to hear that you find useful.
What version of Mgcod are you running? I could reproduce your error with version 1.0.0. However, it seems to be fixed in version 1.0.1. Depending on how you installed Mgcod, you can update it by running conda update mgcod
or git pull
.
Let me know if the issue persists after updating Mgcod.
Best, Aaron
Hi, Aaron
Thank you for your prompt reply!
According to your suggestion, I installed the latest version of Mgcod (v1.0.1) with conda, and finally solved the above problem smoothly. Thanks again for your kind help.
All Best, Shujie
During running this software, I came across this issue. Any suggestion on how to solve this? Thanks!