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gatechatl / JUMPg

For future update on JUMPg, please goto https://github.com/liyuxin-bioinformatics/JUMPg
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Problem in generating a JUMP database- JUMPg error #2

Open memooooooo opened 6 years ago

memooooooo commented 6 years ago

I'm trying to run JUMPg_v2.3.1.pl from the instructed directory (as said in JUMPg readme) but getting this error again "Problem in generating a JUMP database _ft_mc2_c0.fasta.mdx Please check builddb.params file carefully" this is he output i'm getting -

ft_mc2_c0.fasta has been successfully generated _ft_mc2_c0.pit has been successfully generated

JUMP search database is being generated Creating database

You submit 1 jobs for creating index files

Sorting indexes You submit 40 jobs for sorting index files 40 jobs finished Mergering files You submit 2 jobs for merging index files 2 jobs finished Removing temporary files Database creation completed Using the following rawfiles: Search finish

Problem in generating a JUMP database _ft_mc2_c0.fasta.mdx Please check builddb.params file carefully

liyuxin-bioinformatics commented 6 years ago

Could you please try the latest version at https://github.com/liyuxin-bioinformatics/JUMPg

Note that the program can be run on either high performance computing system or a single server: 1) Cluster mode (key parameters: 'cluster = 1' & 'Job_Management_System = SGE'); and 2) Single server mode (key parameters: 'cluster = 0' & 'processors_used = 8').

You may first try the single server mode for the example data.

Best, Yuxin

esraaelmligy commented 1 year ago

did you manage to solve it? i am facing the same error while using the latest version