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gatk-workflows / five-dollar-genome-analysis-pipeline

Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline
https://gatk.broadinstitute.org/hc/en-us
BSD 3-Clause "New" or "Revised" License
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Hg37 support #10

Closed jpaaso closed 6 years ago

jpaaso commented 6 years ago

Hi,

Is there a way to make this work with Hg37? Or is there a similar Hg37 pipeline available?

Thanks, Juho

bshifaw commented 6 years ago

Hi Juho,

No there isn't a HG37 version. For possible workarounds please post your questions in the GATK forum for the dev team can review. Thanks

jpaaso commented 6 years ago

Will do, thanks!