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gatk-workflows / five-dollar-genome-analysis-pipeline

Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline
https://gatk.broadinstitute.org/hc/en-us
BSD 3-Clause "New" or "Revised" License
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what is "five-dollar- genome-analysis" mean? #14

Closed runningsnail2333 closed 5 years ago

runningsnail2333 commented 6 years ago

hi, I have a question: why does this title name "five-dollar-genome-analysis-pipeline"? does it mean the whole analysis cost 5 dollars? but if the input ubam file is around 100G, does the whole analysis cost is still 5 dollars ? thanks

bshifaw commented 6 years ago

Hi @runningsnail2333 This blog post on the gatk site has a good description of the $5 pipeline, also feel free to post questions to GATK forums.

Run the germline GATK Best Practices Pipeline for $5 per genome