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gatk-workflows / five-dollar-genome-analysis-pipeline

Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline
https://gatk.broadinstitute.org/hc/en-us
BSD 3-Clause "New" or "Revised" License
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BamToGvcf.wdl typo in local import #21

Closed lmtani closed 5 years ago

lmtani commented 5 years ago

First of all, thanks for making available this awesome workflow.

I think that this commented line:

https://github.com/gatk-workflows/five-dollar-genome-analysis-pipeline/blob/a418352b4103c5ccdff099b63ec14866b0d5602d/tasks/BamToGvcf.wdl#L4

Should be:

# import "GermlineVariantDiscovery.wdl" as Calling

bshifaw commented 5 years ago

Fixed, thanks