start fastq with gatk4 - Githubissues

gatk-workflows / five-dollar-genome-analysis-pipeline

Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline

https://gatk.broadinstitute.org/hc/en-us

BSD 3-Clause "New" or "Revised" License

57 stars 45 forks source link

Closed biofer closed 6 years ago

biofer commented 6 years ago

what can I do if start fastq with gatk4? How to get unmapped bam, I need mapping before use gatk?