gaurav / taxondna

Taxonomy-aware DNA sequence processing toolkit
http://www.ggvaidya.com/taxondna/
GNU General Public License v2.0
31 stars 10 forks source link

System hang on Linux Ubuntu 16.04 #66

Open kfeilich opened 6 years ago

kfeilich commented 6 years ago

Hi @gaurav , I'm getting what I imagine is the same memory limit issue as everyone else, but on Ubuntu. I've tried running SequenceMatrix through the terminal using java -Xms1024M -Xmx3000M -jar SequenceMatrix.jar but it's still hanging. Is there another way to tweak the memory limit that I'm missing? Or even update the memory limit within the javascript somewhere? I'm a bit at a loss. It's possible I'm hitting the memory limit of my machine--but the system monitor doesn't seem to show that. (File import starts at the small blip in memory.) screenshot from 2018-05-08 16-30-55