Error in as(chrDF, "RangedData") :

gavinha / TitanCNA

Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer

GNU General Public License v3.0

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Error in as(chrDF, "RangedData") : #87

Closed LiQingsolab closed 3 years ago

LiQingsolab commented 3 years ago

Hi,

When I used TiTanCNA， I met this question：

Error in as(chrDF, "RangedData") : no method or default for coercing "data.frame" to "RangedData" Calls: getPositionOverlap -> as In addition: Warning message: RangedData objects are deprecated. Please migrate your code to use GRanges or GRangesList objects instead. See IMPORTANT NOTE in ?RangedData Execution halted

What can I do to solve this questions？ The R version：R3.6

LiQingsolab commented 3 years ago

Hi,

I found the correct R scripts, Thanks!