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gavinha / TitanCNA

Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer
GNU General Public License v3.0
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Run Titan on tumor-only WGS sample #91

Closed ysbioinfo closed 2 years ago

ysbioinfo commented 3 years ago

Hello, I want to apply titanCNA on my WGS data, however I only have tumor samples without matched normal. Can Titan deal with this? Thanks alot!

Yang

npatel-ah commented 2 years ago

Hello Yang, Were you able to run this for Tumor Only WGS sample ?

gavinha commented 2 years ago

Hi @YangShi-PKU and @Admera2020

Here’s a Titan workflow that might help. https://github.com/GavinHaLab/TitanCNA_SV_WGS_tumorOnly

Best, Gavin