Open gregorgorjanc opened 1 year ago
Convert mapping functions - providing a genetic map and implementing it with the gamma-sprinkling model
This paper describes a software that infers parameters of the gamma-sprinkling model: CODA (crossover distribution analyzer): quantitative characterization of crossover position patterns along chromosomes https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-12-27
Genetic Map Functions https://onlinelibrary.wiley.com/doi/full/10.1002/0470011815.b2a05037 by Speed
The Speed paper (or his older work) talks about a generic mapping functions used for the gamma model (gamma-sprinkling model uses two parameters for interference and we should be able to convert any value for these parameters to map choice)
Convert mapping functions - providing a genetic map and implementing it with the gamma-sprinkling model
This paper describes a software that infers parameters of the gamma-sprinkling model: CODA (crossover distribution analyzer): quantitative characterization of crossover position patterns along chromosomes https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-12-27
Genetic Map Functions https://onlinelibrary.wiley.com/doi/full/10.1002/0470011815.b2a05037 by Speed
The Speed paper (or his older work) talks about a generic mapping functions used for the gamma model (gamma-sprinkling model uses two parameters for interference and we should be able to convert any value for these parameters to map choice)