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gaynorr / AlphaSimR

R package for breeding program simulations
https://gaynorr.github.io/AlphaSimR/
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Website: point to Owen's "mechanistic model" simulation #179

Open gregorgorjanc opened 5 months ago

gregorgorjanc commented 5 months ago

Owen used AlphaSimR for "mechanistic" simulations. It would be neat to point to that simulation work in the forthcoming website.

gregorgorjanc commented 5 months ago

This is the paper:

Investigations into the emergent properties of gene-to-phenotype networks across cycles of selection: a case study of shoot branching in plants https://academic.oup.com/insilicoplants/article/4/1/diac006/6577055

and here is the code

https://github.com/powellow/GeneticCanalizationOfG2PNetworks

There are outputs related to the above paper: https://doi.org/10.6084/m9.figshare.23590083.v1, as well as a simulated sorghum dataset (integrating APSIM and AlphSimR) for GxE prediction investigations: https://doi.org/10.6084/m9.figshare.23789685.v5