gaynorr / AlphaSimR

R package for breeding program simulations
https://gaynorr.github.io/AlphaSimR/
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Document species and demography models in runMacs #3

Closed gregorgorjanc closed 2 years ago

gregorgorjanc commented 3 years ago

We have to document species and demography models in runMacs

For CATTLE we have https://academic.oup.com/mbe/article/30/9/2209/1002512

For MAIZE we follow https://www.research.ed.ac.uk/en/publications/evaluation-of-genomic-selection-training-population-designs-and-g

For WHEAT we follow https://acsess.onlinelibrary.wiley.com/doi/pdf/10.2135/cropsci2016.09.0742

For EUROPEAN we follow ???

gaynorr commented 2 years ago

I'm adding these citation in and I'm dropping EUROPEAN, because it just takes too long to run (days) to make sense to support. I

gregorgorjanc commented 2 years ago

Cool call re EUROPEAN. Eventually we should provide support to leverage stdpopsim, but the underlying msprime (backward in time) is to slow for now - maybe SLiM could help (forward in time). There is time for that in the future.