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gbif-norway / helpdesk

Please submit your helpdesk request here (or send an email to helpdesk@gbif.no). We will also use this repo for documentation of node helpdesk cases.
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LLMs & bioinformatics paper - Deadline 30 April #154

Open rukayaj opened 10 months ago

rukayaj commented 10 months ago

Making this issue so we can have a discussion about possibly writing up some of our findings about LLM use in bioinformatics into a paper. @dagendresen suggests publishing in a special issue from the BioDT consortium - likely in a Pensoft journal (maybe exploring something with higher impact)

samariddinbarotov commented 10 months ago

It would be Great. I will joint you. It is my dream to learn bioinformatic.

Rindiser commented 10 months ago

Do we need to do more testing of the workflow?

rukayaj commented 10 months ago

Do we need to do more testing of the workflow?

We definitely do... We were planning to do it for nhm Algae as well right?

rukayaj commented 3 months ago

Reminder from Stefano the deadline for this is 30 April if we plan to submit. More info:

The aim of the special issue (https://www.mdpi.com/journal/plants/special_issues/21D4X64082) is to investigate how recent developments in the field of Biodiversity Informatics can improve both theoretic and applied research in Plant Conservation. The special issue, which will accept submissions till April 2024, is focused on the following topics: apps, awareness raising, biodiversity data gathering, citizen science, digital accessible knowledge (DAK), digitization of natural history collections, global change ecology, invasive alien species (IAS), mobilization of biodiversity data, plant diversity, species distribution models (SDMs). However, other topics related to the main aim of the special issue can be investigated. Invited authors will benefit of a relevant discount on open access publication fees (the exact amount is to be discussed after Im have the total amount of invited authors which will accept the invitation). All the manuscript will be (obviously) peer reviewed. I am thus inviting you to submit a manuscript to this special issue. I was wondering if you could discuss the potential for high speed digitization of herbaria thanks to innovative workflows which make use of the potential of Artificial Intelligence, and how this could potential affect research and practices in conservation. However, if you have something interesting in mind, please feel free to submit a manuscript on a different topic. You can obviously have as many co-authors you like.