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Please submit your helpdesk request here (or send an email to helpdesk@gbif.no). We will also use this repo for documentation of node helpdesk cases.
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Arven etter Nansen joint cruise 3 benthic marine dataset from Andreas @ UiT #97

Closed rukayaj closed 1 year ago

rukayaj commented 2 years ago

This can be our first test run of how we will advise people to do data publication during the Nansen course. He's going to send more information.

rukayaj commented 2 years ago

He sent a spreadsheet through. A sample (a combination of the event sheet + occurrence sheet all in one):

eventID parentEventID eventDate eventTime eventRemarks samplingProtocol sampleLocation recordedBy occurrenceRemarks decimalLatitude decimalLongitude minimumDepthInMeters maximumDepthInMeters _gearType scientificName
5425873a-94dd-11ec-902e-005056a2bfc1 44a6b980-94a3-11ec-8036-eb0c1b9b6bfd 2022-02-23 12:22 Macrofauna taxonomy Nansen Legacy version 10 - Campelen trawl Uit Museum Birte Schuppe Hormathia digitata on top of a Buccinidae 76.4994 31.1935 316.47 316.47 Campelen trawl Buccinidae
c199a1f6-956a-11ec-902e-005056a2bfc1 44a6b980-94a3-11ec-8036-eb0c1b9b6bfd 2022-02-23 12:22 Macrofauna taxonomy Nansen Legacy version 10 - Campelen trawl Uit Museum Birte Schuppe Asteroidea 76.4994 31.1935 316.47 316.47 Campelen trawl Urasterias linckii
7f0ac982-94e3-11ec-902e-005056a2bfc1 44a6b980-94a3-11ec-8036-eb0c1b9b6bfd 2022-02-23 12:22 Macrofauna taxonomy Nansen Legacy version 10 - Campelen trawl Uit Museum Birte Schuppe Cephalopoda 76.4994 31.1935 316.47 316.47 Campelen trawl Bathypolypus arcticus

He also has some images which he is sorting through. I suggest we use the simple multimedia extension seeing as each event seems to be one occurrence so event core is not a problem.

Just so I remember - on the original spreadsheet I changed:

Queries:

aaltenburger2 commented 2 years ago

sampleLocation - for most there is only a picture. Few will be included in the museum collection as physical specimens. So institutionCode should be used for pictures?

rukayaj commented 2 years ago

Discussion with Andreas - Use new xlsx file (downloaded from IPT) Add recordedByID column with ORCIDs (these should be separated with a | - e.g. "https://orcid.org/0000-0002-6313-0529 | https://orcid.org/0000-0002-2857-2276" ) Share large images via teams - GBIF Norway will host them on static.gbif.no

rukayaj commented 2 years ago

Quick update - Images are now hosted by us. We've decided that it makes more sense for for the dataset to be hosted on http://gbif.imr.no/ipt/ rather than our IPT. I had a quick zoom with Arnfinn and he seemed happy to add the Nansen Legacy Project as a data publisher there and to publish to GBIF. But he is on a cruise for the next week so we will have to do it after he gets back.

In the meantime @aaltenburger2 and I are making a dwca on the gbif.no IPT so that it's easy to just download it and stick it on http://gbif.imr.no/ipt, ready for publication.

rukayaj commented 2 years ago

It's actually possible to break the star schema and publish events + parent events, and occurrences linked to images. We can do this by publishing with occurrence core mapping and just adding the eventid and parenteventids. So I guess that would make sense for this particular dataset. See https://github.com/gbif/ipt/issues/1790

rukayaj commented 2 years ago

I've made a wikidata entry for the cruise http://www.wikidata.org/entity/Q112672532 so that we can have a better parentEventID than toktnummer which it seems only has meaning here https://toktsystem.imr.no/cruises/

I think we should probably do this for all the Nansen cruises which will have data split into multiple datasets, and we should teach it in the Nansen legacy workshop #73

This morning I also followed up with Arnfinn re getting a SIOS DOI + publishing.

rukayaj commented 2 years ago

He has covid! So perhaps this will only happen after the summer...

rukayaj commented 1 year ago

Link so it is easy to find: https://ipt.gbif.no/manage/resource.do?r=aen_jc3

rukayaj commented 1 year ago

We published this in the end rather than getting Arnfinn to publish it on his IPT. So I am closing this issue.