search

gbif / checklistbank

GBIF Checklist Bank
Apache License 2.0
31 stars 14 forks source link

Regression for Chaetophora incrassata (Hudson) Hazen #287

Open ahahn-gbif opened 1 year ago

ahahn-gbif commented 1 year ago

The algae genus Chaetophora is matched to different parts of the taxonomy, here wrongly to Asteraceae (same for Chaetophora endiviaefolia) - counter-example with mapping to the correct taxonomic branch, see message bottom.

Checking http://backbonebuild-vh.gbif.org:9000/species/match2?verbose=true&name=Chaetophora, I am not sure where the correct Chlorophyta-branch is coming from.

relates to: https://github.com/gbif/backbone-feedback/issues/140

image

{
  "count": 178,
  "verbatim_kingdom": "Plantae",
  "verbatim_phylum": "null",
  "verbatim_class": "Algae",
  "verbatim_order": "null",
  "verbatim_family": "Algae",
  "verbatim_genus": "Chaetophora",
  "verbatim_species": "incrassata",
  "verbatim_infra": "null",
  "verbatim_rank": "species",
  "verbatim_verbatimRank": "null",
  "verbatim_scientificName": "Chaetophora incrassata Hazen",
  "verbatim_generic": "null",
  "verbatim_author": "Hazen",
  "current_kingdom": "Plantae",
  "current_phylum": "Bryophyta",
  "current_class": "Bryopsida",
  "current_order": "Hookeriales",
  "current_family": "Hookeriaceae",
  "current_genus": "Chaetophora",
  "current_subGenus": "null",
  "current_species": "Chaetophora lobata",
  "current_scientificName": "Chaetophora incrassata (Hudson) Hazen",
  "current_acceptedScientificName": "Chaetophora lobata Schrank",
  "current_kingdomKey": 6,
  "current_phylumKey": 35,
  "current_classKey": 327,
  "current_orderKey": 1339,
  "current_familyKey": 8750,
  "current_genusKey": 2639708,
  "current_subGenusKey": "null",
  "current_speciesKey": 7424330,
  "current_taxonKey": 5271500,
  "current_acceptedTaxonKey": 7424330,
  "proposed_kingdom": "Plantae",
  "proposed_phylum": "Tracheophyta",
  "proposed_class": "Magnoliopsida",
  "proposed_order": "Asterales",
  "proposed_family": "Asteraceae",
  "proposed_genus": "Chaetophora",
  "proposed_subGenus": "null",
  "proposed_species": "Chaetophora lobata",
  "proposed_scientificName": "Chaetophora incrassata (Hudson) Hazen",
  "proposed_acceptedScientificName": "Chaetophora lobata Schrank",
  "proposed_kingdomKey": 6,
  "proposed_phylumKey": 7707728,
  "proposed_classKey": 220,
  "proposed_orderKey": 414,
  "proposed_familyKey": 3065,
  "proposed_genusKey": 10168258,
  "proposed_subGenusKey": "null",
  "proposed_speciesKey": 7424330,
  "proposed_taxonKey": 5271500,
  "proposed_acceptedTaxonKey248": 7424330,
  "_key": 9453,
  "changes": {
    "phylum": true,
    "phylumKey": true,
    "class": true,
    "classKey": true,
    "order": true,
    "orderKey": true,
    "family": true,
    "familyKey": true,
    "genusKey": true
  },
  "reviewed": false
}

counter-example with correct matching:

{
  "count": 172,
  "verbatim_kingdom": "null",
  "verbatim_phylum": "null",
  "verbatim_class": "null",
  "verbatim_order": "null",
  "verbatim_family": "Algues",
  "verbatim_genus": "Chaetophora",
  "verbatim_species": "null",
  "verbatim_infra": "null",
  "verbatim_rank": "null",
  "verbatim_verbatimRank": "null",
  "verbatim_scientificName": "Chaetophora elegans",
  "verbatim_generic": "null",
  "verbatim_author": "null",
  "current_kingdom": "incertae sedis",
  "current_phylum": "null",
  "current_class": "null",
  "current_order": "null",
  "current_family": "null",
  "current_genus": "null",
  "current_subGenus": "null",
  "current_species": "null",
  "current_scientificName": "incertae sedis",
  "current_acceptedScientificName": "null",
  "current_kingdomKey": 0,
  "current_phylumKey": "null",
  "current_classKey": "null",
  "current_orderKey": "null",
  "current_familyKey": "null",
  "current_genusKey": "null",
  "current_subGenusKey": "null",
  "current_speciesKey": "null",
  "current_taxonKey": 0,
  "current_acceptedTaxonKey": "null",
  "proposed_kingdom": "Plantae",
  "proposed_phylum": "Chlorophyta",
  "proposed_class": "Chlorophyceae",
  "proposed_order": "Chaetophorales",
  "proposed_family": "Chaetophoraceae",
  "proposed_genus": "Chaetophoropsis",
  "proposed_subGenus": "null",
  "proposed_species": "Chaetophoropsis elegans",
  "proposed_scientificName": "Chaetophora elegans (Roth) C.Agardh",
  "proposed_acceptedScientificName": "Chaetophoropsis elegans (Roth) B.Wen Liu et al.",
  "proposed_kingdomKey": 6,
  "proposed_phylumKey": 36,
  "proposed_classKey": 329,
  "proposed_orderKey": 1347,
  "proposed_familyKey": 4679,
  "proposed_genusKey": 10195594,
  "proposed_subGenusKey": "null",
  "proposed_speciesKey": 10725537,
  "proposed_taxonKey": 5271495,
  "proposed_acceptedTaxonKey248": 10725537,
  "_key": 15135,
  "changes": {
    "kingdom": true,
    "kingdomKey": true,
    "phylum": true,
    "phylumKey": true,
    "class": true,
    "classKey": true,
    "order": true,
    "orderKey": true,
    "family": true,
    "familyKey": true,
    "genus": true,
    "genusKey": true,
    "species": true,
    "speciesKey": true,
    "scientificName": true,
    "acceptedScientificName": true,
    "taxonKey": true
  },
  "reviewed": false
}