gbif / data-mobilization

For capturing and discussing potential datasets suitable for publishing to GBIF
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Mückenatlas #229

Open gbif-portal opened 3 years ago

gbif-portal commented 3 years ago

Mückenatlas

Dataset link: https://mueckenatlas.com/about/

Region: Germany

Taxon: Mosquitoes

Type: occurrence

Why is this important: This is a very rish dataset of mosquito records, perhaps the best in Europe

Priority: high

License: Not open

Bibliographic reference: https://doi.org/10.1038/s41598-020-80365-3

Comments: I don't know the holders of these data, but I think it is a particularly important dataset that ought to be made more open. In their paper they say they can't make it open because it is linked to people's homes, but I am sure it could be gridded and still be very useful.

Dataholders contact information: doreen.werner@zalf.de

Users contact info: quentin.groom@plantentuinmeise.be

DimEvil commented 2 years ago

Data might be included in VECTORBASE

https://open-research-data.zalf.de/SitePages/DatasetInformation.aspx?ord=DK_153

Abstract: The data available in connection with the publication are the data for the respective raster maps as well as the data table for modelling. (1) Raster data (count_covar_raster.grd): The data are stored as a raster stack with 9 layers. The layers are named as follows: Layer 1: "subs", the number of submissions Layer 2: "pop", the number of inhabitants Layer 3: "age", the average age of the population Layer 4: "fem", the percentage of the female population Layer 5: "temp", the average temperature in °C from March to November (2012-2017) Layer 6: "preci" the average rainfall in mm from March to November (2012-2017) Layer 7: "wind", the average wind speed in m/s Layer 8: "water", the presence of a larger, standing water body (yes=1, no=0) Layer 9: "east", the location of the grid cell in former political East Germany (yes=1, no=0) in the respective grid cell. (2) Raster data with complete cases for the predictors respected in the Automated modelling selection as data table (model_compl_cases.csv). The column names correspond to the raster data layer names. The variables are additionally described in the "Table Structure" section. The data used for the submission counts are an export of the nationwide database "CULBASE" that contained all data from mosquito monitoring since start of the nationwide monitoring programme in 2011. The CULBASE merged into the new database VECTORBASE in September 2020. Both databases are not publicly.

mdoering commented 2 years ago

Hard to find: https://vectorbase.org/vectorbase/app/search/dataset/AllDatasets/result?filterTerm=CULBASE https://vectorbase.org/vectorbase/app/search/dataset/AllDatasets/result?filterTerm=mückenatlas

CaroleSinou commented 2 years ago

This issue is directly linked to this one: https://github.com/gbif/data-mobilization/issues/46

CaroleSinou commented 2 years ago

Contacted Dr Pernat and Werner to explain the project and see what could be done.

kingenloff commented 1 year ago

Neither Mückenatlas nor Culbase appear to be publicly available on VectorBase. Should be followed up...