gbif-pipelines
commented
1 week ago Identifier validation still failing for the dataset Rhizobacteria promoting plant growth and bacteria degrading toxic pollutants (CNR-IBBR-SUB):
- Crawler attempt: 83
- Publishing organization: Consiglio Nazionale delle Ricerche, Istituto di Bioscienze e BioRisorse (CNR-IBBR)
- Publishing country: ITALY
- Installation: Institute of Biosciences and Bioresources CNR-IBBR, Bari, Italy
- Number of occurrences indexed for this dataset at the time of the issue: 84
- Cause: GBIF ID problems exceed 50% threshold: 100% duplicates; 84 total records; 84 absent records
- Pipelines execution steps: http://api.gbif.org/v1/pipelines/history/execution/4305961/step
New IDs sample:
Old IDs sample:
https://biomemory.cnr.it/dbrecord/043e39fc-50cd-b0dc-4d88-2f87a67462cb
https://biomemory.cnr.it/dbrecord/06b5de1d-77df-c2ad-b74e-ee247f7148c5
https://biomemory.cnr.it/dbrecord/09710753-a5dc-c73e-fba8-a28c4dd68065
https://biomemory.cnr.it/dbrecord/09907d14-80ae-e7e8-0dcf-9f2030309784
https://biomemory.cnr.it/dbrecord/0b44c15c-f0d5-be97-78ea-fef070e59a34
https://biomemory.cnr.it/dbrecord/105d0756-9a7c-659b-0aaf-a3722a4dbe42
https://biomemory.cnr.it/dbrecord/22b13bfe-0df8-0778-f522-75415a987858
https://biomemory.cnr.it/dbrecord/25f957c1-e484-ff6f-d5ee-7664086b475c
https://biomemory.cnr.it/dbrecord/2c3830f8-6602-e40c-770d-3f9c41f68aa9
https://biomemory.cnr.it/dbrecord/2df93433-3fd0-9d2b-be53-744159958035Publisher email
Hello, I am contacting you from the GBIF Secretariat about a dataset published by the [Rhizobacteria promoting plant growth and bacteria degrading toxic pollutants (CNR-IBBR-SUB)](https://registry.gbif.org/dataset/2aeae1a6-4478-4577-8519-e3898ef1bf12) : https://doi.org/10.15468/bprp46. We noticed that the occurrenceIDs were changed. We have temporarily paused the ingestions of this dataset. As you might already know, when an occurrence record has a new occurrenceID for a given dataset, our system considers it to be a new occurrence. This means that it will be given a new gbifid and a new occurrence URL (like this one: https://www.gbif.org/occurrence/1252968762) and the old gbifid and URL will be deprecated. In this case, this means that the occurrence URLs would be deprecated when ingesting the newest versions of these datasets. We would like to check with you if those changes were intentional. Do you know if this is the case? Please let us know, thanks! We are happy to resume the dataset ingestion. Note that some users rely on those occurrence URLs and gbifids (like https://bionomia.net for example). In an attempt to improve the stability of the occurrence URLs and gbifids, we have implemented a warning system to detect these type of changes in datasets (see this news item). If the data publisher can provide us with a list of old and new occurrenceIDs per record, we can avoid the identifier and URL changes. Could that be an option? Please let us know if you have any question. Thanks! All the best,You can skip/fix identifier validation using the registry UI.
Identifier validation failed for the dataset Rhizobacteria promoting plant growth and bacteria degrading toxic pollutants (CNR-IBBR-SUB):
Publisher email
Hello, I am contacting you from the GBIF Secretariat about a dataset published by the [Rhizobacteria promoting plant growth and bacteria degrading toxic pollutants (CNR-IBBR-SUB)](https://registry.gbif.org/dataset/2aeae1a6-4478-4577-8519-e3898ef1bf12) : https://doi.org/10.15468/bprp46. We noticed that the occurrenceIDs were changed. We have temporarily paused the ingestions of this dataset. As you might already know, when an occurrence record has a new occurrenceID for a given dataset, our system considers it to be a new occurrence. This means that it will be given a new gbifid and a new occurrence URL (like this one: https://www.gbif.org/occurrence/1252968762) and the old gbifid and URL will be deprecated. In this case, this means that the occurrence URLs would be deprecated when ingesting the newest versions of these datasets. We would like to check with you if those changes were intentional. Do you know if this is the case? Please let us know, thanks! We are happy to resume the dataset ingestion. Note that some users rely on those occurrence URLs and gbifids (like https://bionomia.net for example). In an attempt to improve the stability of the occurrence URLs and gbifids, we have implemented a warning system to detect these type of changes in datasets (see this news item). If the data publisher can provide us with a list of old and new occurrenceIDs per record, we can avoid the identifier and URL changes. Could that be an option? Please let us know if you have any question. Thanks! All the best,You can skip/fix identifier validation using the registry UI.