gbif / ingestion-management

Tracking of data issues seen during data ingestion processes
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Identifiers validation failed for dataset GenLink - Genetic diversity of Trifolium repens #185

Closed gbif-pipelines closed 1 year ago

gbif-pipelines commented 1 year ago

Identifier validation failed for the dataset GenLink - Genetic diversity of Trifolium repens:

Hello,

I am contacting you from the GBIF Secretariat about a dataset published by the GenLink - Genetic diversity of Trifolium repens : https://doi.org/10.15468/oyfamv. We noticed that the occurrenceIDs were changed. We have temporarily paused the ingestions of this dataset.

As you might already know, when an occurrence record has a new occurrenceID for a given dataset, our system considers it to be a new occurrence. This means that it will be given a new gbifid and a new occurrence URL (like this one: https://www.gbif.org/occurrence/1252968762) and the old gbifid and URL will be deprecated.

In this case, this means that the occurrence URLs would be deprecated when ingesting the newest versions of these datasets.

We would like to check with you if those changes were intentional. Do you know if this is the case? Please let us know, thanks! We are happy to resume the dataset ingestion.

Note that some users rely on those occurrence URLs and gbifids (like https://bionomia.net for example). In an attempt to improve the stability of the occurrence URLs and gbifids, we have implemented a warning system to detect these type of changes in datasets (see this news item). If the data publisher can provide us with a list of old and new occurrenceIDs per record, we can avoid the identifier and URL changes. Could that be an option?

Please let us know if you have any question. Thanks!

All the best,

You can skip/fix identifier validation using the registry UI.

ktotsum commented 1 year ago

There was no change of the IDs and this happened due to the wrong link on their repository. Data ingestion was successful on 2023-08-21.