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gbif / ipt

GBIF Integrated Publishing Toolkit (IPT)
https://www.gbif.org/ipt
Apache License 2.0
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MIxS terms broken #2404

Closed thomasstjerne closed 4 months ago

thomasstjerne commented 4 months ago

We are trying to import a DWC archive from the eDNA tool into ipt.gbif.org. We get these error messages: Skipped mapped term https://w3id.org/mixs/0000050, which is unknown to extension http://rs.gbif.org/terms/1.0/DNADerivedData Skipped mapped term https://w3id.org/mixs/0000092, which is unknown to extension http://rs.gbif.org/terms/1.0/DNADerivedData The source archive uses the unmapped terms, which correspond to the xml definition of the extension:

Recently, Matt added some mapping mechanism from ttps://w3id.org/mixs/0000092 => https://w3id.org/gensc/terms/MIXS:0000092 It seems the IPT knows this mapping, but that somehow it breaks the use of the DNA derived data extension.

thomasstjerne commented 4 months ago

https://github.com/gbif/dwc-api/blob/dev/src/main/java/org/gbif/dwc/terms/MixsTerm.java#L127-L136

mike-podolskiy90 commented 4 months ago

@thomasstjerne I suppose after releasing a new version of the extension we can close this one