Open ymgan opened 1 year ago
We retrieve data through the EBI portal API like this https://www.ebi.ac.uk/ena/portal/api/search?result=sequence&format=json&limit=100&query=(country=%22Denmark*%22%20AND%20tax_id=704171)&fields=doi,country,sample_accession,accession,location,country,identified_by,collected_by,collection_date,specimen_voucher,sequence_md5,scientific_name,tax_id,altitude,sex,description
There is unfortunately not much info about the publication there. Full list of available attributes are here: https://www.ebi.ac.uk/ena/portal/api/returnFields?dataPortal=ena&format=json&result=sequence
Hi,
Referring to the dataset and records below
GBIF dataset: INSDC Sequences GenBank record: https://www.ncbi.nlm.nih.gov/nuccore/MZ823800 GBIF occurrence record: https://www.gbif.org/occurrence/3969152007
collected_by
is a single value field in GenBank submission. It is nice that the person is acknowledged. However, the author who performed the sequencing and identification is not listed anywhere in the occurrence record (Altenburger,A. in this example). Is there any plan to improve the acknowledgement of authors (of GenBank submission) for INSDC dataset in GBIF please?Thanks a lot!
@aaltenburger2 @rukayaj