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gbouras13 / dnaapler

Reorients assembled microbial sequences
MIT License
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Add option to annotate fasta headers with Gene_Reoriented #67

Closed ammaraziz closed 10 months ago

ammaraziz commented 11 months ago

Thanks for creating and maintaining dnaapler! It's running fantastically well. I had a feature request:

Is your feature request related to a problem? Please describe. I am running dnaapler all ... as the input contains both plasmids and genomes.

dnaapler outputs fasta headers in the format {contig_name} rotated=True. I want to know which gene (dnaA, repA, etc) was used to reorientate which sequence.

Describe the solution you'd like The information is captured as it's present in *_summary.tsv file. Fingers crossed this isn't a big ask

Describe alternatives you've considered NA

Additional context NA

Thanks!

gbouras13 commented 10 months ago

Fixed by v0.5.1 thanks for suggesting this @ammaraziz

ammaraziz commented 9 months ago

Thank you @gbouras13 ! Very helpful