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gbouras13 / hybracter

Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.
MIT License
108 stars 8 forks source link

[BUG] Add required channels to install instructions/documentation #40

Closed ammaraziz closed 10 months ago

ammaraziz commented 10 months ago

Describe the bug The install instructions are missing channels, specifically bioconda and conda-forge.

To Reproduce

The instructions are:

mamba create -n hybracterENV hybracter

Unless the user has added bioconda channel as a default the above will fail to find hybracter.

There are also some distributions of mamba (eg micromamba) which do not have any default channels. This causes a heap of issues when installing bioconda tools which require 'external' tools from conda-forge.

I recommend adding both channels explicitly to the instructions.

mamba create -n hybracterENV -c bioconda -c conda-forge hybracter

A bit verbose but better safe than sorry.

gbouras13 commented 10 months ago

Hi @ammaraziz ,

Agree with all of this, thanks for pointing this out. I'll update the documentation shortly.

gbouras13 commented 10 months ago

Hi @ammaraziz ,

I've added this to the docs for v0.5.0. Thanks again for picking this up.

George