I am using pharokka to annotate a GenBank (gbk) file that I have. However, I noticed that the start positions in the annotation results are counted from 0 instead of 1, which is different from the start positions when using a FASTA file with pharokka.
What I Did
I used pharokka on fasta file and according genbank file (I adeed --genbank flag) and got different results.
Description
I am using pharokka to annotate a GenBank (gbk) file that I have. However, I noticed that the start positions in the annotation results are counted from 0 instead of 1, which is different from the start positions when using a FASTA file with pharokka.
What I Did
I used pharokka on fasta file and according genbank file (I adeed --genbank flag) and got different results.